rs227061614 SNP Detail

Summary

• ID
  rs227061614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124746467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCTTAC CCACTTCCAT
  TTTCACTTTA CTGAGGCTCC CTCACCTTTT AGCAGGCTTT GGCCAAGCCC TCTCCTAAGG
  AGGCACCCTT ACAAATGCTC ACCTGGTGTG AACAAACCTT GATGCTCTCT CTGTCTGGCT
  ATCTCTTCCT CAAATGGCTT CCTGGTCTTT GCCCTTCTAC TCCCAGAGCC TGGAACACCA
  Y
  CCCAGTCCTA CACTACCATT GATACCTAAT GTTTACTTAA CATTCCGCTG CTGAGTAAGA
  CGCCATCTTA AGTACTTCCC ACAGACTATC TGCTTTTACT CTATTAGGCA GGTAAACGCT
  TCAGGTGGGA CGCTGAAGCC TGTAGTTATC AGACAACTTG CCCAAAGTCA CGCAGTTCCT
  GAATGGGAGG GAACGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376355916	MGP_WTSI_8_126543628	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227061614					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376355916	MGP_WTSI_8_126543628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124746467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	739 bp proximal
Taf5l	TATA-box binding protein associated factor 5 like	within coordinates
Tssr80012	transcription start site region 80012	1427 bp upstream
Tssr80013	transcription start site region 80013	1724 bp upstream
Tssr80014	transcription start site region 80014	1791 bp upstream
Tssr80015	transcription start site region 80015	1840 bp upstream
Tssr83422	transcription start site region 83422	1206 bp downstream
Tssr83423	transcription start site region 83423	1315 bp downstream
Tssr83424	transcription start site region 83424	1631 bp downstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	1780 bp upstream