rs227063360 SNP Detail

Summary

• ID
  rs227063360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19306120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGGCAT GGGGAAATGG
  AGACTGCAGG CCAGACTTTG AAGGGAAGCT AGCCAGTTCT GGTGTGGTGA AAGTGGCTCT
  GGCAGGCCTT GCGCCCTATT CCCTCCGCCT TGAGAAAAAG TGTTTGATTA CATTCCTAAA
  GCTAGCCACC AAGGTCTACT CCCTTATTTG GATACTTCCT CCTGAGGCTG AATACCAAGG
  Y
  AGAATTATCA CAGTATTGAA GTCCAGCAAC CAAAAGCCCC CTTTGGCCCA CCTAATTAAC
  ACACTTATTT AAAATTAAAC ACCTCACCCT AACACAGGGT TTCTCCTTGT GTCTTTATAA
  ATTGCCATTT TTCTATGGGT CAAGTCTGTC TCCTCTTTAT CCATTGGCAG TCCTTTGTTC
  CTCTGGGATA CTCCTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370752216	MGP_WTSI_7_20157544	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227063360					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370752216	MGP_WTSI_7_20157544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19306120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	788 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	37 bp upstream
Rr643192	regulatory region 643192	1127 bp distal
Rr643193	regulatory region 643193	341 bp proximal
Rr643194	regulatory region 643194	763 bp proximal
Rr643195	regulatory region 643195	1442 bp proximal
Tssr70933	transcription start site region 70933	1162 bp downstream
Tssr70934	transcription start site region 70934	1177 bp downstream
Tssr70935	transcription start site region 70935	1184 bp downstream
Tssr70936	transcription start site region 70936	1598 bp downstream