rs227066037 SNP Detail

Summary

• ID
  rs227066037
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97145793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTCCCTCG GGCACCACCG
  GGGCTTTGCG GGGGGAGGGG GTGCGGAGGC GCCGCGGGGA CGCCCCCCGG TTCCCTGGGA
  AAGTTCGAGC CCTTTTCCTA ACTCGGAGAC GGCGGCCCGA GGCACCGGGC CCAGCTCTAG
  AAGCAAAGGG GCAGGAAAGA AGGCTTCCGG TTGGAATGCA CAGATAAGGG CATTAGCCTT
  W
  AAAAAAAATA AACAAAAAAA ACAAAAACAA AAAAAATCCA GAGTCGCGCT GGCGGCTTCA
  GGACTAGGAT TAATTCGGTA GGGGTGGCTA CGCAGAAGGA CTTGTCCCCT AGAGGCCCTA
  CAGCCACCAG GGCTCCAGTA GACTGAGCTA GCATTCTCGG AAGGCACAAG CTGAACAAGG
  CCATGTGAAA ATGAGGGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325076406	CHEV_15_97078343	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227066037					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97145793 () rs orientation: forward

Symbol	Name	Function Class
Amigo2	adhesion molecule with Ig like domain 2	625 bp upstream
Cpgi7616	CpG island 7616	within coordinates
Gm57814	predicted gene, 57814	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	1208 bp proximal
Rr308785	regulatory region 308785	1608 bp proximal
Rr312356	regulatory region 312356	within coordinates
Tssr132852	transcription start site region 132852	908 bp downstream
Tssr132853	transcription start site region 132853	860 bp downstream
Tssr132854	transcription start site region 132854	464 bp downstream
Tssr136109	transcription start site region 136109	655 bp upstream
Tssr136110	transcription start site region 136110	597 bp upstream