rs227078121 SNP Detail

Summary

• ID
  rs227078121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126622288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGTTGA TGAAGAGTCG
  TGAGGAGTTG GTGGGAAGAG GAGACTGTAC CAAGAAGAGC TTTCCTCCAC TCTCCCCTCT
  CCCCCATCAA CTTGGAGCTC ACCAAGGCTG GGAGGGAAGT GGCTGAGAGC TCACTGGTAC
  CCCCTCTGCC CCAGAGAGGG AGCCCACAGC TGTGGGGGGG GCTGCCACCA CTGCTGCTGC
  Y
  GCCGCCGCCG CTGCTGCTGC CGCTGCCGCC ATTGGACAAA CCTCACCAGT ACCTATAGGG
  AGAAACACCA AGGATCACAG CACAACCTAA ATGGCAAGAA ACATGTTCCA TACCCCAGAC
  TTTTCAACTA TTTCCCTATT TCCCCTGGGA CACAGCCGTT ACTTCCTATC TGGTCCCCAG
  AGGCTTCGGC CTGCCTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079230	MGP_WTSI_7_134166630	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227078121					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079230	MGP_WTSI_7_134166630	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126622288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19726	CpG island 19726	1687 bp distal
Gm53372	predicted gene, 53372	852 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Prrt2	proline-rich transmembrane protein 2	1905 bp upstream
Rr368440	regulatory region 368440	1246 bp upstream
Rr655670	regulatory region 655670	1990 bp distal
Rr655671	regulatory region 655671	1719 bp distal
Rr655672	regulatory region 655672	1756 bp distal
Rr655673	regulatory region 655673	815 bp distal
Rr655674	regulatory region 655674	1665 bp proximal
Tssr69153	transcription start site region 69153	1754 bp downstream
Tssr69154	transcription start site region 69154	1702 bp downstream
Tssr69155	transcription start site region 69155	1669 bp downstream
Tssr74899	transcription start site region 74899	1981 bp upstream
Tssr74900	transcription start site region 74900	1964 bp upstream
Tssr74901	transcription start site region 74901	1927 bp upstream
Tssr74902	transcription start site region 74902	1900 bp upstream
Tssr74903	transcription start site region 74903	1521 bp upstream
Tssr74904	transcription start site region 74904	1481 bp upstream
Tssr74905	transcription start site region 74905	1783 bp downstream
Tssr74906	transcription start site region 74906	1965 bp downstream