rs227078575 SNP Detail

Summary

• ID
  rs227078575
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172032344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCAAGA TGGAGGCAGC
  CAGAGCTAAC TGGCCTGGGA TTAGGCAGGG CAGAGCGGGG CTTGCTGGTT ATGAGCGGGG
  ATGAGCCCTG TGTGACTAGC TAGCTTTCCC AGCTTTCCCC TTCCTGGTTT AGTTTCTCTC
  TCCCTAGTCA TCTTTAGTTT ATTTTTCTGC CTCTTTCAGT TACTCTTTTT TTGGGGGGGT
  T
  TCTTTTTTGT AATTTTGTCT CCCACCCCTC TCCCACCTGG GAGGACCAAA ACCCAGGGCC
  TTGGGCTTGA CAGGCAAGCA CTCTACCATT GAGCTAATTC CCACCCCCCT TTTATTCTTT
  TACTGGGCAC TGAGGCCTCC CAGCTCTTCC TGCTCACTCC ATTTGGCGGT AGCCATGGAT
  ACATTTGAAC TTGGTAAGAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352400906	MGP_WTSI_1_174134908	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227078575					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352400906	MGP_WTSI_1_174134908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172032344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	1431 bp proximal
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr423483	regulatory region 423483	within coordinates
Rr423484	regulatory region 423484	199 bp proximal
Rr423485	regulatory region 423485	700 bp proximal
Tssr294	transcription start site region 294	1851 bp downstream
Tssr295	transcription start site region 295	1903 bp downstream
Tssr296	transcription start site region 296	1979 bp downstream
Tssr15164	transcription start site region 15164	1877 bp downstream
Tssr15165	transcription start site region 15165	1907 bp downstream
Tssr15166	transcription start site region 15166	1998 bp downstream