rs227087274 SNP Detail

Summary

• ID
  rs227087274
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83483301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGGTGGT GCCACATCCC
  CTTAATCCCA GCACAAGGGA GGCAAGGGGC AGGCGGATCT CTTCTGAGTT CTAGGCCAGC
  CTGGTCTACA GAGCGGGTTC CAGGACAGTC AACGCTACAC AGAGAAACCT TGTCTCAGGG
  GAAAAAAAAA AAAAAAAAAA GTCTAAATAA ACAATGGCTC ATTTTTTAAG TGTATGCCCC
  M
  AATACTGCAT GTGACACACC AAAATTATCT TAAACTATGT AAACTGGACA TTTATTTTTA
  TTTTTGCTAA ATCTGGTGAT GCTATTTTAG GAAAAGAACC GGCACACTGT CGCATCTATT
  TCTAGCGAAT GAAACATGCC AGTAAACCAG TATAATTCTG GGGCTATCTA AAGCCTGCGT
  CAGGCTATTA CGTCCCCGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369032976	MGP_WTSI_6_83456313	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227087274					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369032976	MGP_WTSI_6_83456313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83483301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	183 bp proximal
Dguok	deoxyguanosine kinase	within coordinates
Rr399724	regulatory region 399724	558 bp upstream
Rr632884	regulatory region 632884	462 bp distal
Rr632885	regulatory region 632885	640 bp proximal
Tssr1908	transcription start site region 1908	762 bp upstream
Tssr61663	transcription start site region 61663	59 bp upstream
Tssr61664	transcription start site region 61664	497 bp downstream
Tssr61665	transcription start site region 61665	511 bp downstream
Tssr61666	transcription start site region 61666	519 bp downstream
Tssr61667	transcription start site region 61667	546 bp downstream
Tssr61668	transcription start site region 61668	570 bp downstream
Tssr61669	transcription start site region 61669	576 bp downstream