rs227088876 SNP Detail

Summary

• ID
  rs227088876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68514976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCGGATG GGGAGCTCAC
  CGCGGCGTTT CTCCCTTCCA TCTTCCATCG CCCGCGCGGG GCTCCGGGCC GCGGGGAACC
  GGGCTGGGCG CGCGAGTGCG GGCGGCTCTT TGTTGCGCGC CCCGGGACGG ACAGCCGTGG
  CCCACGGCGG CGGCGGCGGC AGCGGCGGCG GCAGCGCGCA CCCGGGCGTT AGCGGCGGAG
  Y
  CCGCGGCGGA CACCCGGGCC GGCCCCCGGC AACGTCAAGG CGAAGGCGGC GGGGGCGGCG
  CCCGGCACGG AGGCGGAGGC GGCGTCGGCG GAGGCTCGGC TCGGCTCGGC TCGGCTCGGC
  GGAGTAGCGT CCTGCAGCCC TCTGCTGCCT GTTGCTTTGT CTCCTTCCGC AACACCCCCT
  CCCCCGAGAA AAGTGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375054714	MGP_WTSI_8_70586223	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227088876					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375054714	MGP_WTSI_8_70586223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68514976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20399	CpG island 20399	within coordinates
Psd3	pleckstrin and Sec7 domain containing 3	within coordinates
Rr664367	regulatory region 664367	108 bp distal
Rr664368	regulatory region 664368	within coordinates
Tssr81474	transcription start site region 81474	948 bp upstream
Tssr81475	transcription start site region 81475	within coordinates
Tssr81476	transcription start site region 81476	120 bp downstream