rs227093381 SNP Detail

Summary

• ID
  rs227093381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGACAGT GACCTTGCAA GCTCATCAGC
  AGACTGGTCC AGCATGGGGG AAGAACTGGA GCAATGAAGC CAGCGATGGT CAGGACTGGG
  GAAGGAGGAG TGAGCACGAA ACACTAAGCT GCGGGAGATT GGAAAAGGGA GCAGTTGCAG
  Y
  CAGTGATGAG ATGGTGTGCC TAGTCTTCAG CAGGCCAATA CTGAAGGATG AAATGTAAAT
  ACATATATGT CTATTTTAAA GAACCAAACG TGGTTCTCCA AACGCTAGTC aaaaaaaaaa
  taaaaaaaaa taaGGCGTGC GCACGCACGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391931	CHEV_2_91022489	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227093381					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	within coordinates
Gm74571	predicted gene, 74571	within coordinates
Madd	MAP-kinase activating death domain	within coordinates
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1729 bp downstream
Rr367225	regulatory region 367225	1556 bp upstream
Rr397125	regulatory region 397125	767 bp upstream
Rr560660	regulatory region 560660	133 bp distal
Rr560661	regulatory region 560661	within coordinates
Rr560662	regulatory region 560662	323 bp proximal
Rr560663	regulatory region 560663	506 bp proximal
Rr560664	regulatory region 560664	565 bp proximal
Rr560665	regulatory region 560665	1476 bp proximal
Tssr18868	transcription start site region 18868	120 bp downstream
Tssr25161	transcription start site region 25161	536 bp downstream
Tssr25162	transcription start site region 25162	609 bp downstream
Tssr25163	transcription start site region 25163	685 bp downstream
Tssr25164	transcription start site region 25164	1491 bp downstream
Tssr25165	transcription start site region 25165	1509 bp downstream
Tssr25166	transcription start site region 25166	1622 bp downstream
Tssr25167	transcription start site region 25167	1645 bp downstream