rs227102748 SNP Detail

Summary

• ID
  rs227102748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCATTC ATTCAATAAA
  CTGACCTTGA ACACCAATTC TGCCAAACAC CATGGTAAAT GTAGAGTGCT ACTTTAACTC
  CAATCAGTCT AATATTTCTT ACTAGGAATA ATCTCTGACC CAGTTAAACT GTTGTGCTGA
  TAAAACTGGA ATATACTTCT GTGCCGATAC TGTCATTTAG GAAGTATTAA GTCACCATCA
  R
  CATCACTATC TCCTCTATTT AAAAAGTTTC CTTTAGCATG ATGCTAAGGT TAAAGAGAAA
  ACAACAGCTA AGAATGATGA GCTCTTCTTT GACTTGCTTT TTTGTTGGTG GATAGTATAA
  AAACTGAGGC TTGAGACAAC CTGGTATTAA AGGTGAAAAG GTGACCACAC CCAGAGTCAG
  ATGGCTTAGG TGTGGTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403025281	MGP_WTSI_X_9014823	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227102748					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025281	MGP_WTSI_X_9014823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303936 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160518	transcription start site region 160518	1696 bp downstream
Tssr160519	transcription start site region 160519	1052 bp downstream
Tssr160520	transcription start site region 160520	988 bp downstream
Tssr160521	transcription start site region 160521	934 bp downstream
Tssr160522	transcription start site region 160522	817 bp downstream
Tssr162874	transcription start site region 162874	1793 bp upstream
Tssr162875	transcription start site region 162875	1770 bp upstream
Tssr162876	transcription start site region 162876	1614 bp upstream
Tssr162877	transcription start site region 162877	1595 bp upstream
Tssr162878	transcription start site region 162878	1543 bp upstream
Tssr162879	transcription start site region 162879	1437 bp upstream
Tssr162880	transcription start site region 162880	1351 bp upstream
Tssr162881	transcription start site region 162881	1333 bp upstream
Tssr162882	transcription start site region 162882	1033 bp upstream
Tssr162883	transcription start site region 162883	643 bp upstream
Tssr162884	transcription start site region 162884	578 bp upstream
Tssr162885	transcription start site region 162885	542 bp upstream
Tssr162886	transcription start site region 162886	522 bp upstream
Tssr162887	transcription start site region 162887	484 bp upstream
Tssr162888	transcription start site region 162888	430 bp upstream
Tssr162889	transcription start site region 162889	412 bp upstream
Tssr162890	transcription start site region 162890	342 bp upstream
Tssr162891	transcription start site region 162891	314 bp upstream
Tssr162892	transcription start site region 162892	259 bp upstream
Tssr162893	transcription start site region 162893	154 bp upstream
Tssr162894	transcription start site region 162894	118 bp upstream
Tssr162895	transcription start site region 162895	62 bp upstream
Tssr162896	transcription start site region 162896	35 bp upstream
Tssr162897	transcription start site region 162897	4 bp upstream
Tssr162898	transcription start site region 162898	5 bp downstream
Tssr162899	transcription start site region 162899	151 bp downstream
Tssr162900	transcription start site region 162900	161 bp downstream
Tssr162901	transcription start site region 162901	192 bp downstream
Tssr162902	transcription start site region 162902	274 bp downstream
Tssr162903	transcription start site region 162903	335 bp downstream
Tssr162904	transcription start site region 162904	436 bp downstream
Tssr162905	transcription start site region 162905	520 bp downstream
Tssr162906	transcription start site region 162906	524 bp downstream
Tssr162907	transcription start site region 162907	597 bp downstream
Tssr162908	transcription start site region 162908	621 bp downstream