rs227103276 SNP Detail

Summary

• ID
  rs227103276
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTGGTAA AGCATAGCTA TTTTATTGAC
  CTATTTTAAA AAATTAGTTT AACCCACTCA GTGGCTTGAG TTTTGCTCAG AAGAATCGGA
  CTTGGGTCAC ATCATCAGCA GATGTTCCAA ACGGCACCAA ACAGTATAAG ATTAAAGCAG
  M
  TGCTTACAGC CTTTCTGTGA CTGAGTCAGC TTGCTGGTGC AGTCTCTAAC CCAGCAAGCG
  TGATTAGCTT TCTTTTCCTT TGCAATCTCT CCTTTCTGGT TTCCTGTACG GTTTGTCTGC
  TCTGCTAATT TTTTCCTCTC TCCAACTCCA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002346	CHEV_3_142159199	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227103276					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gbp5	guanylate binding protein 5			Intron
				Noncoding-Transcript-Variant
Rr398084	regulatory region 398084			265 bp upstream
Rr586444	regulatory region 586444			1987 bp distal
Rr586446	regulatory region 586446			175 bp proximal
Rr586447	regulatory region 586447			676 bp proximal
Tssr32047	transcription start site region 32047			537 bp upstream
Tssr32048	transcription start site region 32048			556 bp upstream
Tssr32049	transcription start site region 32049			580 bp upstream
Tssr32050	transcription start site region 32050			638 bp upstream
Tssr32051	transcription start site region 32051			689 bp upstream