rs227104516 SNP Detail

Summary

• ID
  rs227104516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21322684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATATAAT AGAATGGCCA
  GTTATTTTTG ACTTCCACAG AAGATTAACA AGGGGAGAAA CGATCTTTAA ATCTAGCAAA
  AACATTTGGT AGTTCCTAAG AATTGGCATC TTGATTTATG ATTGAGTAAC TACTGACACA
  AAGGACACAA AGAATGTTGG GCATTCACTA CTTTAAAACA AGTCCCCAGA AAGTAAACCA
  Y
  TACCCATCTT CCGTGGTTAA CTTTATAGTG AGGGGCTGAC TCTTGGCCAG AAGCACCAGA
  GAAACCACAT TTCTAAATGC TATGTTTATA TAGTGCCTTG CAAATGAAAT TTCTTTAGAG
  AGGGGCTTGA ATTTAAATTC CAGATCTTCA GATAGAGTAT CTCACTCCTT AAGAATGAGG
  AAAATAGCTC AGCTGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss382665886	MGP_WTSI_11_21272687	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T	T	T	C	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227104516					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T	T	T	C	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382665886	MGP_WTSI_11_21272687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21322684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	921 bp distal
Gm12043	predicted gene 12043	within coordinates
Rr243512	regulatory region 243512	1459 bp proximal
Rr246416	regulatory region 246416	683 bp distal
Rr402440	regulatory region 402440	1246 bp downstream
Tssr3440	transcription start site region 3440	1906 bp upstream
Tssr3441	transcription start site region 3441	1878 bp upstream
Tssr3442	transcription start site region 3442	1658 bp downstream
Tssr100572	transcription start site region 100572	1947 bp downstream
Tssr107068	transcription start site region 107068	1995 bp upstream
Tssr107069	transcription start site region 107069	1463 bp upstream
Tssr107070	transcription start site region 107070	1408 bp upstream
Ugp2	UDP-glucose pyrophosphorylase 2	1483 bp upstream