rs227105947 SNP Detail

Summary

• ID
  rs227105947
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3896779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGATAAGAA TGGGCAGATA TGAGGCCAAA
  CTTTAATACA GGCTCTGTAT TTAAAGTGCC TGTTGCCCTG ATAACCCCAA GAAATtgaca
  gagcactgtg tgcctgtgat ctcagtgctg gggagacaga aacaagagaa tccttgggtt
  W
  tgctagccaa ccaatctgat tctgatgtcc catgttcagt aaaaggccat gtttcaatat
  aaggtggaga gagcacctga acacctcaca attcctaccc ctaaccccca GCCAGTTCTG
  CTCCTGCTGG GCCCACATCC TCCACAACCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325088617	CHEV_16_4078915	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227105947					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3896779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7905	CpG island 7905	817 bp distal
Rr370033	regulatory region 370033	1003 bp downstream
Rr510763	regulatory region 510763	598 bp distal
Rr510764	regulatory region 510764	843 bp distal
Rr510765	regulatory region 510765	741 bp proximal
Trap1	TNF receptor-associated protein 1	1088 bp upstream
Tssr139752	transcription start site region 139752	1084 bp upstream