rs227107176 SNP Detail

Summary

• ID
  rs227107176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142219124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGATGTT CCTCATTCCA
  GGGAGACTTG TAAATTTGTT GGGAGTAAGG AGCATTAAAA AGGTGTTTGA GAACACCTCT
  AGTCCTTGTG AGGCCAGATT AGGCTGCAAG CCCTCTGCTA AGGGTCTCCT TTAGAGAAAA
  AAAAAATGGC AAGGGCCGGC AGAGGGGTTC TCTACCTTTC CCCAAGAAGG GGCACAGGCC
  R
  GAGATGAGCA AGGTTCTGGG AACAGAGTCC CGATTCTGGA GTCCTGCCTT CCTTTTCCTA
  AGGGGCATCT GAGAGGGCAG CAATCACAAC CTGTGGCCTG TTTCAGAGCC TAATCTCTGC
  TTTCTGCCCT CCAGAGGTCT CTGGAGAAGC CGCTGACTCA CACCCCGGAG ATGAACTCCT
  GGACTTTGCC AGGTAGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454692	MGP_WTSI_7_149851292	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227107176					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454692	MGP_WTSI_7_149851292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142219124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19969	CpG island 19969	608 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr15	regulatory region 15	149 bp proximal
Rr316	regulatory region 316	1140 bp distal
Rr658256	regulatory region 658256	207 bp distal
Tssr70256	transcription start site region 70256	230 bp downstream
Tssr70257	transcription start site region 70257	398 bp upstream
Tssr70258	transcription start site region 70258	416 bp upstream
Tssr75901	transcription start site region 75901	697 bp upstream
Tssr75902	transcription start site region 75902	674 bp upstream
Tssr75903	transcription start site region 75903	556 bp upstream
Tssr75904	transcription start site region 75904	817 bp downstream
Tssr75905	transcription start site region 75905	1432 bp downstream