rs227107924 SNP Detail

Summary

• ID
  rs227107924
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78458330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTGTTT ATTGGACTTT
  TGGGTTTCCT ATTACACAAG TTACTATTTG TGTATTTGTC CATTTCTCTA CTGGAGTATT
  TTTTCCCCTC ATATTTATTT GGAGAAGTTC GGTGTTTGAT TTTTCAAGTG TGAATTGCTA
  TAACCGTTTC ATAGTTCATT TCCAGTATGT GGAATTATTT TTTTTGAAGC TGTGATATTT
  M
  TAAAGGTTTA TTTGTATGTG GTCAACTTTA ATTTTTCTTC CCTAATGATT GATACTCTTT
  GAGTGATTCT TTCTTAAGCA TTCCTATGCA ATTTCACAAA GATATTCTAC AAAGTGTGTA
  CAGTTTCTGT CTACAGACAG TGACCTTGAT ACACAGAGTG GATTTTAGAT GACAAAGGGG
  CTGCTAGTAG GTTTTGTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394657274	MGP_WTSI_15_78404560	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227107924					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394657274	MGP_WTSI_15_78404560	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78458330 () rs orientation: forward

Symbol	Name	Function Class
Gm36738	predicted gene, 36738	281 bp downstream
Rac2	Rac family small GTPase 2	1347 bp upstream
Rr307919	regulatory region 307919	671 bp proximal
Rr312023	regulatory region 312023	929 bp distal
Rr404481	regulatory region 404481	1176 bp downstream
Tssr135251	transcription start site region 135251	1455 bp upstream
Tssr135252	transcription start site region 135252	1440 bp upstream
Tssr135253	transcription start site region 135253	1380 bp upstream
Tssr135254	transcription start site region 135254	1340 bp upstream
Tssr135255	transcription start site region 135255	926 bp upstream
Tssr135256	transcription start site region 135256	901 bp upstream