rs227108038 SNP Detail

Summary

• ID
  rs227108038
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26086285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCAAAT TAAAATATGT
  TCTTCCTTGA AATGTATTGA AAACTCAGCA AGGTTTTCTG TACTAAGCCA ATCTTTTTGT
  TTTGTTGGTT ACTTCCTTTA TTTATTTATG TATATTTTTG AGACGGTCTT GATATGTAGC
  CCAGGCTGGC CTTGAACTCA GAGACCAGCC TGCCTCTGTC TCCTGAGTGC TGGGACTAAA
  S
  GCATTTGTCA CCACGTCTTT TACAACACAT GTTTTTCATA TAGATGCATG AGTTTATATA
  CATTTTTTTT TGTGGGAAAC TCCAAGCCTT ACCTTGTCCA GAAAATAGCT AAGAATGAAT
  TATAACTGTA GAAGGCCATG TTTATTTTTT TTGTTTCAAC TAACCAACAC AGAGACCTAG
  GCAAAAGAAG CAAACAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374007134	MGP_WTSI_8_26706741	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	G	G	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227108038					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	G	G	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374007134	MGP_WTSI_8_26706741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26086285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	662 bp proximal
D830025C05Rik	RIKEN cDNA D830025C05 gene	743 bp upstream
Gm45570	predicted gene 45570	1163 bp upstream
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	within coordinates
Rr368506	regulatory region 368506	1165 bp upstream
Rr400804	regulatory region 400804	679 bp upstream
Rr661157	regulatory region 661157	333 bp proximal
Rr661158	regulatory region 661158	754 bp proximal
Rr661159	regulatory region 661159	1217 bp proximal
Tssr76686	transcription start site region 76686	827 bp upstream
Tssr76687	transcription start site region 76687	1425 bp upstream
Tssr80717	transcription start site region 80717	731 bp downstream
Tssr80718	transcription start site region 80718	1190 bp downstream
Tssr80719	transcription start site region 80719	1272 bp downstream
Tssr80720	transcription start site region 80720	1342 bp downstream