rs227108925 SNP Detail

Summary

• ID
  rs227108925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164673680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAAAACC AAAAAGAGCC
  GGGCATGGTG GCACACACCT TTAATCCCAG CATTAGGGAG GCAGAGGCAG GCGGATCTCT
  GAGTTCGAGG CCAGCCTGGT CTACAGAGTA AGTTCCAGGA CAGCCAAGGC TAGACAGAGA
  AACCCTGTCT TGAAAACAAA CAAACAAACA AAACAAAACA AAAAGAAAGA ATTTCTCAAC
  Y
  TGGAGTTTGT GACAGCTCCA AACCCACATG TCCAAATCTC AGAACATTTT TCTAAGGAAA
  ACACACAACA CATAGCTGAA TGTGGTTAAA GGTGGCGGCT CATGGCTAAT CCCAACCATC
  CCCACAGGCT GAGGCAGAAA AGACTGTAAA AAGTCCATCC GGAGCCTACC TGGGCTACTT
  ACTGAAATCC AGAGCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441758	MGP_WTSI_2_164657260	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227108925					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441758	MGP_WTSI_2_164657260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164673680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	952 bp proximal
Ctsa	cathepsin A	1113 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	Intron
Rr397479	regulatory region 397479	257 bp downstream
Rr569727	regulatory region 569727	371 bp distal
Rr569728	regulatory region 569728	468 bp proximal
Rr569729	regulatory region 569729	689 bp proximal
Rr569730	regulatory region 569730	1686 bp proximal
Tssr21656	transcription start site region 21656	1102 bp upstream
Tssr21657	transcription start site region 21657	1121 bp upstream
Tssr21658	transcription start site region 21658	1199 bp upstream
Tssr27546	transcription start site region 27546	1678 bp downstream