rs227111121 SNP Detail

Summary

• ID
  rs227111121
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70991149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGCAGTGG CTGCAGTTTT CAGGGTGCTC
  ACTCCAGCCT ACACTGAGCT GAGATGCCCC AGAGTGGCTC TTTATAAGCC TGAATGAAGT
  GTCATACATC TCAGAAAGGA CAGGGCGGAA TCAAGATGAA CTGATCTGTG TATGCATAtc
  M
  ctctctctct ctctctgctc cctccctttc tctctcAGTC GTTCATATGA AAAATATTGT
  CAAAGAGTAC AGTTTTGTTG ACTTACTGTT TCATTCTTTT ATAATTCCAC GCACCTACAC
  TATGTTCTTT TATTAAAGCC TCCCATTATC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417498	CHEV_13_70981908	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227111121					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70991149 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	1219 bp upstream
Cpgi5821	CpG island 5821	1190 bp distal
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	1314 bp upstream
Tssr123159	transcription start site region 123159	1276 bp upstream
Tssr123160	transcription start site region 123160	1247 bp upstream
Tssr123161	transcription start site region 123161	1220 bp upstream