rs227116830 SNP Detail

Summary

• ID
  rs227116830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:104195811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGGGCT CCGTGTGAGA
  CCGAGTTTGG AATTTCTGTG GGCTTCCCAA ACAGGAGTGA CATATTCCTT CACCTCATTG
  AAAATAGAAT TACTTCTGCT GTGGTTTGTA GGCCCCACGG TGCCATCCCC TTTCTGCTTT
  CCTGACAGTG CTTAAAACCC CTCAATCAGA GTGTCCTCTT TCTGCTGGTG TGGGTTAACA
  Y
  CCTTTATACA CCTTCTTCAG TGGGGCTTGC TGAGGGGAGA ACTTCCTGCT CTCTGGAAGT
  CACTAATGGC ATTTTTGTTG GTTGTTACCA GAACAACGAA AAGCTCATTG GTGATTTCTA
  GCACGACAGG GAAAGGAACA CTTAAAGAAG TATATCCAGA ACTGAAACTG CTTATTCCAA
  AGAAAAACCC AAAGCTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366114239	MGP_WTSI_5_104476964	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227116830					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366114239	MGP_WTSI_5_104476964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:104195811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16142	CpG island 16142	393 bp distal
Gm43545	predicted gene 43545	548 bp upstream
Mir5619	microRNA 5619	58 bp upstream
Nudt9	nudix hydrolase 9	Intron
Rr399211	regulatory region 399211	1196 bp downstream
Rr616018	regulatory region 616018	1066 bp distal
Rr616019	regulatory region 616019	within coordinates
Tssr47616	transcription start site region 47616	1384 bp downstream
Tssr47617	transcription start site region 47617	1135 bp downstream
Tssr47618	transcription start site region 47618	1046 bp downstream
Tssr47619	transcription start site region 47619	1031 bp downstream
Tssr47620	transcription start site region 47620	970 bp downstream
Tssr47621	transcription start site region 47621	901 bp downstream
Tssr47622	transcription start site region 47622	872 bp downstream