rs227119012 SNP Detail

Summary

• ID
  rs227119012
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42154649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAAGTC CGGACCACGC
  ATCTGGACGG CGAGATTCTC GCGCTGCCCA AGCAGCTGCA GAGACCAAGG GCGCAGACCG
  AGAAACGCTG CCTCCTTTGC GTGCTCTTGG GGCTCCTGCC TTCACCAGAA CAAAGCAACT
  GCTTTAGATA CACACCGGTG CACACACCTG GACCACAAGG TGGACACTTA ACACCCTGCG
  W
  GGTCTGTGAC CTTGCTACAA ATATCCCCAG TCCTTTGGTG CAGGTTTTCG GGCTGCATGG
  CTCGGCCCAT TTACGAATAA ATATATTTCC ATCACCTCGG CTTGTCTTCG GAAAGTGGAG
  CTGAAGAAAG GAATTCTGCC TTTTAGGGTT GCTATGCTAC CTTAGGACCC GCCTCTGTCC
  TTTCCAGTCT GATCCACTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380164432	MGP_WTSI_10_41998459	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227119012					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380164432	MGP_WTSI_10_41998459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42154649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	1958 bp upstream
Gm56983	predicted gene, 56983	930 bp upstream
Gm66047	predicted gene, 66047	714 bp downstream
Rr401852	regulatory region 401852	792 bp downstream
Rr430524	regulatory region 430524	1775 bp distal
Rr430525	regulatory region 430525	941 bp distal
Rr430526	regulatory region 430526	440 bp distal
Tssr93079	transcription start site region 93079	1753 bp downstream
Tssr97434	transcription start site region 97434	1997 bp upstream
Tssr97435	transcription start site region 97435	1972 bp upstream
Tssr97436	transcription start site region 97436	1910 bp upstream
Tssr97437	transcription start site region 97437	1890 bp upstream
Tssr97438	transcription start site region 97438	1039 bp upstream
Tssr97439	transcription start site region 97439	1013 bp upstream