rs227120845 SNP Detail

Summary

• ID
  rs227120845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103023933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTCCGC GCGCAAGCCC
  CGCCCCCGCG ACCGGATCTC TATTTCTCCC TGGTAAAGCC TAACGCCATC AATGAACTCT
  TTAATTGAGC TCTGACAGGG CGGGTCCAGT TGTGCTTCCG CACAGCTAGT TGTTGACAAA
  AGTCGGGAGA CTGGCAGACA AGCGACCCAA TCAAAGAAGA GATCGGTGAG CGCGGGACGT
  Y
  CACGCAAAGG CAAATAGGTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTTTGGCGT TCCTGGGCAT GGTTGTTGAC GTAATGGGAG CTTGAAAGTA TCCTGGGCAG
  CTTTCCTAGG GTGGAAGAAC TACAACCCCC AGCAGCCATT GCGCTGCCAG GCTGTCCTCT
  TCGCCCCTCC ACCTCCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384516965	MGP_WTSI_11_102994421	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227120845					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384516965	MGP_WTSI_11_102994421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103023933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3955	CpG island 3955	within coordinates
Gm57409	predicted gene, 57409	206 bp upstream
Hexim2	hexamethylene bis-acetamide inducible 2	within coordinates
Rr403011	regulatory region 403011	within coordinates
Rr457520	regulatory region 457520	232 bp distal
Rr457521	regulatory region 457521	within coordinates
Rr457522	regulatory region 457522	249 bp proximal
Tssr105311	transcription start site region 105311	64 bp upstream
Tssr105312	transcription start site region 105312	196 bp upstream
Tssr105313	transcription start site region 105313	226 bp upstream
Tssr105314	transcription start site region 105314	256 bp upstream
Tssr105315	transcription start site region 105315	924 bp upstream
Tssr111155	transcription start site region 111155	1290 bp upstream
Tssr111156	transcription start site region 111156	189 bp upstream