rs227123133 SNP Detail

Summary

• ID
  rs227123133
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:30849899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAAGAA GAAGAAGAAG
  AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG
  ACGACTTCTA AGTATCTTCC CAAGGAAGGA CATTGATCCA TTGTATCCCA ACATTCCTTT
  CTAACTCTCT AATACGATGG GCTAACTCTG TGTGAGATGT TCTTTCCCCC CCCCCAAAAA
  W
  ATGTTCTATT TAATTTGCAG TTTGCACATG ACTTTGGTGA AGAATCCTGT CCAACAACTG
  TTATCTAAGG AACCCTAAGC ACTTCATTTA CATCAGCACC CCAAGCCTGC ACATTACCTG
  TGTAATTCAC TCCTCAGATC AGTGCTTAGC AACAGCAAGC ACTCAAAAGA TGGCAGCTAT
  CTCTAGTAAG GAGCAAATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889040	CHEV_9_30746188	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227123133					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:30849899 () rs orientation: forward

Symbol	Name	Function Class
Gm10700	predicted gene 10700	1599 bp downstream
Gm69354	predicted gene, 69354	1151 bp downstream
Rr675916	regulatory region 675916	1254 bp distal
Rr675917	regulatory region 675917	1358 bp distal
Rr675918	regulatory region 675918	1651 bp proximal
Rr675919	regulatory region 675919	1910 bp proximal