rs227124592 SNP Detail

Summary

• ID
  rs227124592
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136377535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCGGAGC CCCCGCTGCC
  GCCCCGGGAT TTCCCCGCAG GCCTGGAGCG ACGCGAGCGG TGGCGATCCT CTGTCGACCT
  CCCTTGCCAC CCACGGCTGA CTGCCGCCGA CCTGTCATTG CTCTTAAAGG GTTCCCCGCT
  GGTGCACACC TTTAGGGTGG GAAGCTCACC GTGCTCCCTT CCCCCAAGCT CCTAGCACCC
  M
  CTTGGTTACG GGCTATTTGG TTGTCTTTAT TGCTAGGGGT GATTTGTATG TGTATAACTG
  GCAGGGATGG CTCTGGGTTG CTGGCTAGGA GAAGCCAGGG GGATTCGTGG GGTGAGGAAG
  GGGACAACGT GGTTGCCCTT TCTATCCCCA CCATCCTCAC TGTATTCCAA TGTGGAACGG
  GGAAGAGGAA CTGCAGATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359865512	MGP_WTSI_3_136334738	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227124592					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865512	MGP_WTSI_3_136334738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136377535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13862	CpG island 13862			within coordinates
Gm56786	predicted gene, 56786			1830 bp upstream
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr398056	regulatory region 398056			1624 bp downstream
Rr398057	regulatory region 398057			672 bp downstream
Rr585834	regulatory region 585834			1862 bp distal
Rr585836	regulatory region 585836			1640 bp distal
Rr585837	regulatory region 585837			994 bp distal
Rr585838	regulatory region 585838			within coordinates
Tssr31863	transcription start site region 31863			1588 bp downstream
Tssr31864	transcription start site region 31864			1567 bp downstream
Tssr31865	transcription start site region 31865			1545 bp downstream
Tssr31866	transcription start site region 31866			1510 bp downstream
Tssr31867	transcription start site region 31867			1467 bp downstream
Tssr31868	transcription start site region 31868			1348 bp downstream
Tssr31869	transcription start site region 31869			1335 bp downstream
Tssr31870	transcription start site region 31870			1300 bp downstream
Tssr31871	transcription start site region 31871			1247 bp downstream
Tssr31872	transcription start site region 31872			1191 bp downstream
Tssr31873	transcription start site region 31873			1172 bp downstream
Tssr31874	transcription start site region 31874			1046 bp downstream
Tssr31875	transcription start site region 31875			950 bp downstream
Tssr31876	transcription start site region 31876			900 bp downstream
Tssr31877	transcription start site region 31877			1322 bp upstream
Tssr35849	transcription start site region 35849			1837 bp upstream