rs227135127 SNP Detail

Summary

• ID
  rs227135127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134214584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGAGGCCA GCCTGGTCTA
  CAGAGCAAGT TCCAGCACAG CCAGGGCTAC ACGGAGAGAC CCTGTTTCAA AAAACATTCA
  AAAAAAAAAA AAAAAAAAAG CGTTTACTGC TCTTACAGAG GACCGAGGTT CAATTCCCAG
  CACCCATGTG TAAATTCAGG ACCACCACCA CCTATAAATC CATTTCTAGG GCACCCACTA
  Y
  CCTTCCCAGC CTCCTCCATC CCCAGGCACG CACACGGTGC ACACAACCAT GCAGGGAAAA
  CACTCCCTCC CACCCACACA CACAAAGATT TTAATGGGGG GATGGAGGGG CCTGACAGAG
  TACCCCACCA CTGCCCTCAG GTGGCCTGGC TGCTCCTCTG GGCAGCCAGG CTCTTCAGTG
  CTTGCTGCTG TAGGAGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366804285	MGP_WTSI_5_134661615	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227135127					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366804285	MGP_WTSI_5_134661615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134214584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16715	CpG island 16715	966 bp distal
Gm73509	predicted gene, 73509	108 bp upstream
Gtf2ird2	GTF2I repeat domain containing 2	within coordinates
Rr110116	regulatory region 110116	17 bp proximal
Rr110117	regulatory region 110117	1417 bp proximal
Rr124476	regulatory region 124476	783 bp distal
Rr130998	regulatory region 130998	1545 bp proximal
Rr399398	regulatory region 399398	1070 bp downstream
Rr399399	regulatory region 399399	1628 bp upstream
Tssr49084	transcription start site region 49084	1699 bp downstream
Tssr53607	transcription start site region 53607	1321 bp upstream
Tssr53608	transcription start site region 53608	1306 bp upstream