rs227137347 SNP Detail

Summary

• ID
  rs227137347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131710100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTAATAA CAACAGAATA
  TTCATTATCC TTTATATAAA AACACACATA CACACATTTT TGAATCCTCA ACATAATTAC
  GGGATGAGAA TCTTCCTACT ATCTGAGCCT AAATAACTGA AATATGACTT AGAAAACAGT
  TAAAAAAAAA AAAAAGGCAA GAAGACATCA AAAAGCTCTC AGAAAAGCAA ACTCTTAATC
  Y
  GACGGTTTCC TTCAAGCTCC CACACCCAGC AAGAATTCTG CACGCCTCTT TAGCCTTTTT
  CTATGTCACA CATGAGCCCC TCCTACTAAT TTTCCTGCCA AAGTAATGAC CAAATGAAAT
  CCTCAGCACA ATTTACAAGA TCCTCTTAGC TGCCTTTTCT TCTCTATACC CTGAATTGAG
  TTATTATGGA AATTAAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329616	CHEV_4_131538704	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227137347					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131710100 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	823 bp distal
Rr600834	regulatory region 600834	670 bp distal
Rr600835	regulatory region 600835	within coordinates
Tssr43622	transcription start site region 43622	59 bp upstream