rs227138366 SNP Detail

Summary

• ID
  rs227138366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA AAGAGTAGCT GGGATTGTTA
  Y
  ATTAGAGGGA AGGATATAAC TGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321651937	CHEV_5_114580041	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227138366					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268093 () rs orientation: forward

Symbol	Name	Function Class
Alkbh2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	1814 bp upstream
Cpgi16309	CpG island 16309	1634 bp distal
Cpgi16310	CpG island 16310	160 bp proximal
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1285 bp downstream
Tssr48056	transcription start site region 48056	332 bp upstream
Tssr48057	transcription start site region 48057	356 bp upstream
Tssr48058	transcription start site region 48058	1125 bp upstream
Tssr48059	transcription start site region 48059	1152 bp upstream
Tssr52694	transcription start site region 52694	1813 bp upstream
Tssr52695	transcription start site region 52695	673 bp downstream
Tssr52696	transcription start site region 52696	1554 bp downstream
Ung	uracil DNA glycosylase	354 bp upstream