rs227140912 SNP Detail

Summary

• ID
  rs227140912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74544133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTGACAA AATTTCTTAC CAACTGATTA
  CATCTGTCCT TGGGTCTTCA GTCCCTCCTT TTCCTTTTGC CAGTATGCAA CACTATTCTT
  TTGAATATTC ACCCAAATAT TAACATGACA AATGACAAAC ATCATACAAA CACACTAGAG
  Y
  CTATCTGTCT GGCCCAGAAG CCTCCTCTAA TACTTAACAC AATAAACCAA AATGCCCCCT
  TAACATTCCC TCTTAGATTA GTTCTTTCAA CTATAGACTC ATCAGGTACT GTTAACTCGC
  CAAAGGAATA TCTGAAAAAC ACTACAGTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319794729	CHEV_1_74551548	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227140912					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74544133 () rs orientation: forward

Symbol	Name	Function Class
Cnot9	CCR4-NOT transcription complex, subunit 9	1084 bp upstream
Cpgi385	CpG island 385	337 bp proximal
Gm37733	predicted gene, 37733	1673 bp upstream
Rr396106	regulatory region 396106	801 bp upstream
Rr413210	regulatory region 413210	199 bp proximal
Rr413211	regulatory region 413211	819 bp proximal
Rr413212	regulatory region 413212	1095 bp proximal
Rr413213	regulatory region 413213	1670 bp proximal
Tssr7425	transcription start site region 7425	1049 bp upstream
Tssr7426	transcription start site region 7426	1070 bp upstream
Tssr7427	transcription start site region 7427	1137 bp upstream
Tssr7428	transcription start site region 7428	1335 bp upstream
Tssr7429	transcription start site region 7429	1404 bp upstream
Tssr7430	transcription start site region 7430	1728 bp upstream
Tssr12315	transcription start site region 12315	706 bp downstream
Tssr12316	transcription start site region 12316	813 bp downstream
Usp37	ubiquitin specific peptidase 37	within coordinates