rs227144645 SNP Detail

Summary

• ID
  rs227144645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166902634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGTGTC AATCCAAAAC
  CATGTGCCAG CTAGCTGCAG GGTGCATGCT GGCAGCTCAG CTCAGCTCCT GGGAGCTGGA
  GGCAGGAGGG TCGGCAAGTT AAGAGCGGGG AAGCAGAAGC AGGAAGATCA GAAGAAATTC
  AAAGACAGCT TCCACTGAGC CTGAGGCCAA CATGGACTCT ATGAGACCCT GCTTCAACAA
  R
  CACACACCCA AGGGCTCAGG ACCTGGCCAG GCATTCTTAG GACACAGCAG TGGACAGGTT
  CCCTGCTCCC TCCTGCTAGA CAGCAAGTGA GCTCTTAGCC TTCTTTCCTC TCAACCAGCT
  AGCAATTCTT GCCTTGCTTC TGTCTTGAGG ATTTCTGATG CTGGGTGAAG AGGAAGCCCC
  TTCAGGGAAC TTCTCAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497121	MGP_WTSI_2_166886214	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227144645					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497121	MGP_WTSI_2_166886214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166902634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	1406 bp proximal
Gm75600	predicted gene, 75600	within coordinates
Rr570435	regulatory region 570435	1998 bp distal
Rr570436	regulatory region 570436	360 bp distal
Rr570437	regulatory region 570437	152 bp distal
Rr570438	regulatory region 570438	within coordinates
Rr570439	regulatory region 570439	676 bp proximal
Rr570440	regulatory region 570440	1177 bp proximal
Tssr21785	transcription start site region 21785	1822 bp downstream
Tssr21786	transcription start site region 21786	167 bp downstream
Tssr21787	transcription start site region 21787	556 bp upstream
Tssr21788	transcription start site region 21788	577 bp upstream
Tssr27731	transcription start site region 27731	645 bp upstream
Tssr27732	transcription start site region 27732	587 bp upstream
Tssr27733	transcription start site region 27733	540 bp upstream
Tssr27734	transcription start site region 27734	284 bp upstream
Tssr27735	transcription start site region 27735	258 bp upstream
Tssr27736	transcription start site region 27736	117 bp downstream
Tssr27737	transcription start site region 27737	124 bp downstream
Tssr27738	transcription start site region 27738	135 bp downstream
Tssr27739	transcription start site region 27739	355 bp downstream
Tssr27740	transcription start site region 27740	1844 bp downstream
Tssr27741	transcription start site region 27741	1893 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates