rs227148242 SNP Detail

Summary

• ID
  rs227148242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACGACC CGCTGGCGGC
  GAGTGCGTTG TTACCTACGC GTGCACTAGT GGCCCTGGGA TCGATCCTCT TTTGCTCTGC
  GTCCCCTTCT AACCACTCTG GATCTGCGGG TTTAGCGTAG ATGGCCTTGT GAGCATTTCT
  TGAGAACTTG GGTTGTGCAC GTGGGGGGAG GTATTGTTTT AGTCCTAGGC TGTGGTCAGA
  Y
  GCAATTTTGG GGCCCAGCGA TGCAAGTCGT GTGCCGCGAC CGTTTAGTAA CCTTCCCTGC
  GTCCCCCAAC TCCCCACCCG TCCCACCCTT TTCTTCCCGG CTTGCAGCTG CGAGCTGGAA
  CGTAACTCTT TTTGCTCCAA CGGAAGCCAG AACTTATGTC CTGCCCTGGA GTGGGTTGAA
  GAGTGGGGGG ATGGGCGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342594	CHEV_2_72314914	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227148242					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307201 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	791 bp downstream
Tssr18351	transcription start site region 18351	857 bp downstream
Tssr18352	transcription start site region 18352	645 bp downstream
Tssr18353	transcription start site region 18353	633 bp downstream
Tssr18354	transcription start site region 18354	598 bp downstream