rs227172164 SNP Detail

Summary

• ID
  rs227172164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77542426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAACTTC CACTCCTCTG
  TTGGATCTTA CCAAGGTGCC ATTTTGTCAT TAGAACACAG TTGTTTCCAG TTTTTCTTAT
  TTTTCTCATC GGTTTTCTGT TGATTACTCA TTTGAGCTTA TTTTTAACAT ATTAGGTTAC
  ATACATTTTT TATTATTAGA TATTCTCTTT ATTTACATTT TAAATTTTAT CTCCTTTCCT
  Y
  ATTTCCCCTT CTAACACCCT ATCCCATCCC CTCTTCCCCT GCTCCCCAGC CCACCCACTC
  CTGCTTCCTG GCCCTGGCAT TCTCCTACAC TGGGGCATCG AGCCTTCACA AGACCAAGGG
  CCTCTCCTCT CATTGATGTC CCACAAGGCC ATCCTCTGCT ACATATGCAG CTGGAGCCAT
  GGTTTCCTCC AATGTATACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378138832	MGP_WTSI_9_77482951	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227172164					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378138832	MGP_WTSI_9_77482951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77542426 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	1588 bp upstream
Rr683389	regulatory region 683389	866 bp proximal
Rr683390	regulatory region 683390	1367 bp proximal
Rr683391	regulatory region 683391	1673 bp proximal
Tssr86194	transcription start site region 86194	1325 bp upstream
Tssr86195	transcription start site region 86195	1350 bp upstream
Tssr86196	transcription start site region 86196	1392 bp upstream
Tssr86197	transcription start site region 86197	1431 bp upstream
Tssr86198	transcription start site region 86198	1475 bp upstream
Tssr86199	transcription start site region 86199	1477 bp upstream
Tssr86200	transcription start site region 86200	1492 bp upstream
Tssr86201	transcription start site region 86201	1569 bp upstream