rs227174135 SNP Detail

Summary

• ID
  rs227174135
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133695477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTCACC TCCCGTCGCC
  GCTCATTGGC CCAGTTGGGG TCACGTGGGC GGGGTTTAAA CTCACCTCCT CTGGAGTGAG
  GAGGGGGTGC AGGGGGAGGG CGCTCGAGAC GGCGGCGCGC CTTGGGGGAG GGGGCGCGCC
  TCGGAGTCGG AGGTAATAAA TGAGGGGCGC GCGAGGCGGC AGGCTTGGGG TTCCGCTCCC
  K
  CCCAGACCTG GCTTTTGCAA ACTACCAAGT TCCTTCCACC TTATGCAACC CTTCTACCCA
  CTTCTCCAAG CCGTGCGACA CTGGGCACAT CTCGGCCGCT TTCCTTCCTG CTCCCGCCGG
  GGCCCCAGCA GAGGGGTTTG TGAGGCCTGG CCGCGCCGCC CAGCTCCAGA GGCGGCGGGA
  AGCGCGCCGG CCGCAGCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321344252	CHEV_4_133524081	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227174135					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133695477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15020	CpG island 15020			within coordinates
Dhdds	dehydrodolichyl diphosphate synthase			862 bp downstream
Hmgn2	high mobility group nucleosomal binding domain 2			Intron
				Noncoding-Transcript-Variant
Rr398563	regulatory region 398563			734 bp downstream
Rr601512	regulatory region 601512			within coordinates
Rr601513	regulatory region 601513			474 bp proximal
Tssr39509	transcription start site region 39509			13 bp downstream
Tssr43836	transcription start site region 43836			939 bp upstream
Tssr43837	transcription start site region 43837			882 bp upstream
Tssr43838	transcription start site region 43838			858 bp upstream
Tssr43839	transcription start site region 43839			215 bp upstream
Tssr43840	transcription start site region 43840			161 bp upstream
Tssr43841	transcription start site region 43841			40 bp upstream
Tssr43842	transcription start site region 43842			445 bp downstream