rs227177486 SNP Detail

Summary

• ID
  rs227177486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115526159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCTTT CTGAGTGCTG
  GGACTAAAGG TGTGTGCCAC CACACCTGGC CCCATGCTCA GATGTTTTCT TTATTGACAT
  TCCCTGCATG AGTGCTTTGC CTAATATATG TGTATCCCAT GCATGCTTGG TGCCCGTGGG
  AGCCAGAAGA GGGCGTCAGC TCCCCTGGAA CTGGAGTTCT ATGTGGTTGT GAGCCTCCCC
  R
  TAGGTTCTAG GAATCGAACC CACTTCCTCT GGAAGAGCAG CCAGTGTTCT TAACCTTTGA
  GTTATCTCTC CAGGCCACCG GACTCTTCTT AAAGATGGGT TTTATACAAG TGAAATGAAA
  GTAAGTAAAT CTTTGGGCTA GAGTTTTGGG TGGTTGTGAG CTGCCGCTCC TGTGATCCTG
  AGAACTCAAC CTGTATCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323863476	CHEV_11_115496647	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227177486					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115526159 () rs orientation: forward

Symbol	Name	Function Class
Gm74409	predicted gene, 74409	39 bp upstream
Rr231926	regulatory region 231926	within coordinates
Rr243179	regulatory region 243179	120 bp proximal
Rr403121	regulatory region 403121	659 bp downstream