rs227181377 SNP Detail

Summary

• ID
  rs227181377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56264256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCTCGG GATAAGCTAC
  CTACAGTGAT GTGAATGGGA GCCAGAAAGA GACTCAGGTT GGGTCGGCTC CCAAAGGACC
  ATGAGCAGTG GAAATGTGGG GAGGCCTTGC TGTCTGTTAA GAAACTTGTG GTGGCACAAA
  CCTTTACTCC TAGCACAAAG GAGGCAAAGG GAACCTCCAG TCTGAGATCA GTCTGGATGA
  M
  GTCAGCCAAA GTGACCCAGC GGGACCCTGT AAGAGAGGAT CAGTTTCCAC AGACCCATCC
  ACTGAGGTCC CTAATTCATT TGCTGCTGCA GTCTTAGCTG TTGACTGAGC TGTGAAGATC
  AACATCTGAA TAGACTTGAG GACCTTACCA TCTCCAAAGG CTGCTGTCTC TCTTTCTTCC
  TTGTTCTTTT TATTTTGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325856822	CHEV_19_56350314	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227181377					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56264256 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	1694 bp downstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	1528 bp proximal
Rr549994	regulatory region 549994	1758 bp proximal