rs227188146 SNP Detail

Summary

• ID
  rs227188146
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49593651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTCTTT CTGTGTGTCT
  CTCTGTCTGC CTCTTGTGCC CCCTCTATTC TCTCTCCCTC TCTCCCTCTC TTCCTCTCTT
  CCTCTCTTTC AATGGCACAG TGAGGCTTTA TCTAGGATCC CTTCTTCCTC ATTATCATAC
  CCAGTCATAT CCAAGACTCA GACAAGAGAA CAACCACAGA TCTCTAAAAC AAAGTACAAT
  W
  TTTTTTTTTT GGTATAAGTT GTTTTTCTCA GGTACTTCTT AAAAAATATA ATCATGAAAA
  GCTGACTGAC ACATCTATGG TGTCACGTTT TATTGTGTAA CTAAAGGGGT GTTATTTCCA
  TTCACACATA TGAAAATGAG ATCCAGAGTA GCTAAAACAA AGGATGTAAG CCCATCATGT
  CTTGTATATG ATATAGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396236718	MGP_WTSI_16_49773401	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227188146					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396236718	MGP_WTSI_16_49773401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49593651 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	545 bp upstream
Gm60047	predicted gene, 60047	1998 bp upstream
Rr404848	regulatory region 404848	683 bp upstream
Rr516712	regulatory region 516712	981 bp distal
Rr516713	regulatory region 516713	within coordinates
Rr516714	regulatory region 516714	440 bp proximal
Rr516715	regulatory region 516715	556 bp proximal
Rr516716	regulatory region 516716	1899 bp proximal
Tssr4897	transcription start site region 4897	1948 bp upstream
Tssr138714	transcription start site region 138714	448 bp downstream
Tssr141333	transcription start site region 141333	1594 bp upstream
Tssr141334	transcription start site region 141334	1440 bp upstream
Tssr141335	transcription start site region 141335	503 bp upstream