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rs227193006 SNP Detail
Summary
  • ID
    rs227193006
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:95561795 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGGCTACAC AGAGAGAGGT
    GGTTTTGAAA ACCCCAAAAC AAACAAGCAA GCAAACAAAC TTAAAAATAA AACAACCAAA
    CATTAGTTAA CTGGACAAGG TGGCTTATCC TTACAGTCTC GGCTCTCAGA GGCAGAAGCC
    AAAGCATCAT AAATTCAAGG TGCACCAGGC ATGGTGGCAC ACGCCTTTAA TCCCAGCACT
    Y
    GGGAGGCAGA GGCAGGCGGA TATCTGAGTT CAAGGCCAGC CTGGTCTACA AAGTGAGTTC
    CAGGACAGCC AGGGTTACAC AGAGAAACCC TGTCTCAAAA AAACCAAAAA CCAAAACCAA
    ACAAACAAAC AAAAGGTGCA GGCAGCATGA TAGCTCAGCT GCCAAGTCCA AGTTAAATTC
    AATTTGCAGA GTCCACACCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358905288 MGP_WTSI_3_95458406 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227193006 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss358905288 MGP_WTSI_3_95458406 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95561795 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm64625 predicted gene, 64625 660 bp upstream
Gm65002 predicted gene, 65002 158 bp downstream
Rr366848 regulatory region 366848 within coordinates
Rr580999 regulatory region 580999 603 bp distal
Rr581000 regulatory region 581000 328 bp distal
Tssr971 transcription start site region 971 687 bp upstream
Tssr30620 transcription start site region 30620 721 bp downstream
Tssr30621 transcription start site region 30621 577 bp downstream
Tssr30622 transcription start site region 30622 560 bp downstream
Tssr30623 transcription start site region 30623 551 bp downstream
Tssr30624 transcription start site region 30624 1689 bp upstream
Tssr34506 transcription start site region 34506 759 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory