rs227202645 SNP Detail

Summary

• ID
  rs227202645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6017504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTTGGT GGGAGAAGGA
  GGCAGGGCTG AACAGCAGAA TATAATTAGC AAAACAAACG AAACCCAATT GCACCCCTCC
  AGGAGTTAGG CTGTCTTTAG GCTACCAAGT CACACACCCT TCCACCAGCA CTCGGGAAAG
  GAGTGTGGGA GCTGGAGGGA AGGCTTGTTG TGCAAGCCAA GGACCCAAGT TCGATCTCCA
  R
  AACGGATGTG AGAAAGCACA AGCCTGTGGT TCCAGCACTA GGGAAGGACA GTGGAAGATT
  CCTGGGGCTT ACTGGCCAGC CAGTTTAGCT AGATTGGCAA GCTCCAGTTT CAGTGAAAAA
  CCCTGTTTCA AATAAAAAAT AGAGTTGGAA AGTGACCAAG GAAGACAGGC ATTGACCTCT
  GGTCTACACT TCTTATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382290389	MGP_WTSI_11_5967507	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227202645					SNP	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382290389	MGP_WTSI_11_5967507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6017504 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	1142 bp upstream
Cpgi2551	CpG island 2551	987 bp distal
Cpgi2552	CpG island 2552	767 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442230	regulatory region 442230	1977 bp distal
Rr442231	regulatory region 442231	1266 bp distal
Rr442232	regulatory region 442232	531 bp proximal
Rr442233	regulatory region 442233	1026 bp proximal
Rr442234	regulatory region 442234	1548 bp proximal
Tssr106682	transcription start site region 106682	1869 bp upstream
Tssr106683	transcription start site region 106683	1841 bp upstream
Tssr106684	transcription start site region 106684	1816 bp upstream
Tssr106685	transcription start site region 106685	1776 bp upstream
Tssr106686	transcription start site region 106686	1749 bp upstream
Tssr106687	transcription start site region 106687	1725 bp upstream
Tssr106688	transcription start site region 106688	1593 bp upstream
Tssr106689	transcription start site region 106689	1384 bp upstream
Tssr106690	transcription start site region 106690	1367 bp upstream
Tssr106691	transcription start site region 106691	1139 bp upstream
Tssr106692	transcription start site region 106692	1120 bp upstream
Tssr106693	transcription start site region 106693	1093 bp upstream