rs227204691 SNP Detail

Summary

• ID
  rs227204691
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:80544511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTTGTA TGCATGTGTG
  TGTACCATGT GCAAGCAGTG CCTCACAGGC CAGACCAGGT GTCAGATCCC CCTGAAACCG
  CTATGGGTAG AACCAGCTAG AAGCTGAACC CTACTGAAAG GGCTGCCACT GCTTTTAACC
  ACTGAGCCAT GACTCAGGCC CAGGGTTTCT TTCTTATTTA ATGCTTTAAG TGAAGGTTTC
  V
  CTTCTCTTTC CCCATTCAGA CCCAGCTACA GAATGATAGA ATTTATGGCT ATGTGTGCCT
  GGAAGTGATC AGTCGCTTCT AGAGCAGAAA TTCTAGTGCT CTGGGTAGAA GGATTTGTTG
  AGGCTACCTC CTGGCAGGAC CAAACCTGTG TTAAAAACTG CAGGTCTACT TTGACAGATA
  GTTCTCACCA AGCCATCTGT                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399178394	MGP_WTSI_17_80636422	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A	A	A	A	A	G	A	A	G	G	A	A	A	G	A	A	A	A	A	C	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227204691					SNP	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A	A	A	A	A	G	A	A	G	G	A	A	A	G	A	A	A	A	A	C	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399178394	MGP_WTSI_17_80636422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80544511 () rs orientation: forward

Symbol	Name	Function Class
Dhx57	DExH-box helicase 57	1222 bp downstream
Rr405469	regulatory region 405469	within coordinates
Rr405470	regulatory region 405470	410 bp upstream