rs227205529 SNP Detail

Summary

• ID
  rs227205529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:99141027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTTATA TGAATTATGT
  GAGTTTAATC CATATTTGCT TGTATAAAAG TTTTTCCTTC TGTGAGTGTG ATTCTCTTCT
  CCTGGTTCAA TACAAGTTTA TTGCTCCAAA CTTCCCCCTA GCCTGACAAG CTAAAGGCAT
  CTGGACAAGA GGGAGAAGGC TCTAGCAGCT AATCCTTTAC TTAGTACCCT GTTGTTTCCT
  R
  ATGAGGTGTT AAATGCCAGA CTTGCAGTTT CTGACCTTAA AAGGACTCAG GCAGGTCAGC
  TACAGTAGCT AAGTGACTTA GACAGGTAAA CGTTTTATTA CACAGCAACC CTAAATACCT
  CCTAAGATCA AGTCTTAATC CCCCAATGCC CTTCCCCCTC CGCTGCCTGG AGAAAGCAGA
  AGAACAGTTG GGGCTGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135177	CHEV_9_99159393	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227205529					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99141027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep70	centrosomal protein 70			Intron
				Noncoding-Transcript-Variant
Gm18914	predicted gene, 18914			1971 bp downstream
Gm47199	predicted gene, 47199			501 bp downstream
Rr383815	regulatory region 383815			1224 bp downstream
Rr685374	regulatory region 685374			1660 bp distal