rs227211430 SNP Detail

Summary

• ID
  rs227211430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:103252805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATTTCT AGTGTGCATA
  GGCCCATGAG AGACAGACAG TTTCTTTTTG CCCTACTTTC TGGGTCTAGG ATGTGTTTGG
  AGAGTAGGAT GGAAGGACAG ACTGCAACTT TGGTCAGTGG GGGCAGTGGG TGGGGTTTAT
  TGCACTTGCA ACAGAGTTTA AATAAGTTGG GGTGGGTTCT GGAGGAGAGG GGAGGGTTGG
  Y
  TAGGGAGAGA GGGGCAGCGT CAGTGCAGCT GGTGGGCAGA ACCCAGGTCA TACAGGCCTG
  GGGCTTCCCG TTCTCTCTGG GGAATGAGTG GCCAGGCTGA GGTTCCAGGT CTGTTTGCCA
  ATGTGGCCTG GTTAGGGTCC TGGGCAATTC CTGACTTGTC CTAAGTCAGG GATAAATAGG
  TTTCTAAGCC CAGGTCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395230271	MGP_WTSI_15_103174809	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227211430					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395230271	MGP_WTSI_15_103174809	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103252805 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	mRNA-UTR
Rr404654	regulatory region 404654	1609 bp downstream
Rr510620	regulatory region 510620	1344 bp distal
Rr510621	regulatory region 510621	1756 bp distal
Rr510622	regulatory region 510622	769 bp distal
Tssr136772	transcription start site region 136772	180 bp downstream
Tssr136773	transcription start site region 136773	260 bp downstream
Tssr136774	transcription start site region 136774	334 bp downstream
Tssr136775	transcription start site region 136775	352 bp downstream
Tssr136776	transcription start site region 136776	396 bp downstream
Tssr136777	transcription start site region 136777	428 bp downstream