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rs227221807 SNP Detail
Summary
  • ID
    rs227221807
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:84495189 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCGCCTCGGC CCGGCCCGGC
    GGCAAGTCTC GGAACTCCAA AGGGTTCCAG GCCGTCCGCC ATCCTTTCCG GCTGCCTGCT
    TACCTTGCAC AAGAAGTCGA TATCGTAGAA GGGTGACAGA AGTGTGGTCG ACATTTTTCT
    GGGTCCTGTA ATGGTCGAAA TTGCAAGCGT GGAGGTTGGG AGGTGCCCTC GGTACGGCGA
    K
    ACTCGAACCA AGATGAATAA CGGGCGAGGG CCAAGGAGGG ACGGAAAGTT GTGCTTGTGC
    GGCCGAGGAA GCGGCGGCGG GAGGCCGTGG CGCGGAGTGG GGGGCAGAGG AGAAGCGAGA
    GCGCAGCTCG GCGCCCCGGC CCGCCCCCCG CCCGAGCCGT CGGCAGCTCG CGGACTGGTG
    GAACTCGGAG ACCTGAGAGC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282287 MGP_WTSI_17_84587101 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227221807 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282287 MGP_WTSI_17_84587101 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84495189 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 509 bp distal
Cpgi9566 CpG island 9566 within coordinates
Gm56881 predicted gene, 56881 386 bp upstream
Rr333589 regulatory region 333589 1612 bp proximal
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 112 bp upstream
Tssr146044 transcription start site region 146044 2000 bp downstream
Tssr146045 transcription start site region 146045 644 bp downstream
Tssr146046 transcription start site region 146046 843 bp upstream
Tssr149652 transcription start site region 149652 1740 bp upstream
Tssr149653 transcription start site region 149653 1688 bp upstream
Tssr149654 transcription start site region 149654 1564 bp upstream
Tssr149655 transcription start site region 149655 1420 bp upstream
Tssr149656 transcription start site region 149656 1379 bp upstream
Tssr149657 transcription start site region 149657 1149 bp upstream
Tssr149658 transcription start site region 149658 1106 bp upstream
Tssr149659 transcription start site region 149659 1070 bp upstream
Tssr149660 transcription start site region 149660 1044 bp upstream
Tssr149661 transcription start site region 149661 981 bp upstream
Tssr149662 transcription start site region 149662 941 bp upstream
Tssr149663 transcription start site region 149663 872 bp upstream
Tssr149664 transcription start site region 149664 829 bp upstream
Tssr149665 transcription start site region 149665 757 bp upstream
Tssr149666 transcription start site region 149666 695 bp upstream
Tssr149667 transcription start site region 149667 595 bp upstream
Tssr149668 transcription start site region 149668 571 bp upstream
Tssr149669 transcription start site region 149669 509 bp upstream
Tssr149670 transcription start site region 149670 4 bp upstream
Tssr149671 transcription start site region 149671 66 bp downstream
Tssr149672 transcription start site region 149672 178 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory