rs227224654 SNP Detail

Summary

• ID
  rs227224654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:66953557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATCTCT CATTTCTTTG
  CTTAGTTGGC TCAAAGACAT GTTCAAGTTC CGCTTGCCTT TCGTTGTAAG ATTCACACCT
  TGTAAGACCT GTCTCACTTT GTCATGATGC ACCAGTACCC ACTGATACAC TACCTTCCTC
  TTCACCACTC TCACCTGTAC CTTTCTTCCT GTGTCCCCCT CTCCCCCCCC ACCCCCCCCA
  Y
  CCCCCGGTCC CACTAACTGT CCCAGCTCCA GTAATACCTC CTGTTTCACT TCGGCATGGC
  ACTTCTGGGA GCTAGAGAGG TTGCTTTCTG TGTAAACTCG AGGACTCACA TCCCCAAGTT
  AACTAGCTGG GTGTCATGCT TGTAACTCCA GCTCCCAGGG ATCCAGTGCC TCCTTCTGGT
  CTCTCTGCCC AGGCCTAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380727811	MGP_WTSI_10_66580526	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227224654					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380727811	MGP_WTSI_10_66580526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:66953557 () rs orientation: forward

Symbol	Name	Function Class
Gm65987	predicted gene, 65987	1683 bp upstream
Gm67716	predicted gene, 67716	811 bp downstream
Jmjd1c	jumonji domain containing 1C	within coordinates
Tssr93804	transcription start site region 93804	1721 bp upstream