rs227232809 SNP Detail

Summary

• ID
  rs227232809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110848199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGCAGC TTAAGTGTCA
  CAGGTCAAGG TAACCCACAA ATATAGACCC CCTACCCCAT GTCCCACCTC TAGAAAGTAC
  TGGAAACAGA GAAAGGAGAA GACTTGGGGA CTGTGACTCT GATCCTGCAG AAGCTGGGTG
  GAGATTAAGG AAATCACTCG GTTTCCTGTA CCAGCGCCTG TGTAGGGGGT ACTGGAGTCC
  Y
  TGTTTCCTCC TTCTGGGCTC CAGGAAGCTG GCCTCTAAGA ACTAGCACAC CTGGTTGAGG
  GCAATGGGGC TGGAAGGCAG GCCTATTGGG CAATAGGGTG GGGCCAGCCC GGTGAGGTCA
  CCCAGCACAG ATAAAGGGCC CCGGGGAGAG GGCAGAAGCC AGGCTTGTCC TCTAGGTCTC
  CCAAGACCAC AGACATGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195417	CHEV_9_110921635	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227232809					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110848199 () rs orientation: forward

Symbol	Name	Function Class
Ltf	lactotransferrin	161 bp upstream
Rr687278	regulatory region 687278	within coordinates
Tssr87456	transcription start site region 87456	153 bp upstream
Tssr87457	transcription start site region 87457	1812 bp upstream
Tssr91676	transcription start site region 91676	1964 bp upstream