rs227241196 SNP Detail

Summary

• ID
  rs227241196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106014036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTAT GTATATAAGT
  ACATTGTAGC TATCTTCAGA CACACCAGAA GAGAGCATTG GAGCCCATCA CAGACCGTTG
  TGAGCCACCA TGTGGTTGCT GGGAATTGAA CTCGGGACCT CTGGAAGAGC AGTCAGTGCT
  CTTAACCACT GAGCCATCTC TCCAGTCCTT CTTGTTTTGT TTTACCCAGG GCCTTGTACA
  Y
  ATTAAGCAAA CCCTCAACCA CTGACCTCCA TACCCAACTT CACTATCATG GTTTTAAATA
  AATCAGTTTG GACTCCTCCC TTAAGACCAG GATCAACACT CTTCACACCT ATCTAACTTT
  GCTTTAGACA GAGCATCCCT ATGTAGCCCA TGTGGCCTTC AACTCACCAT CTTCCTACTT
  CAACCTCTCT AGTCTTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375909972	MGP_WTSI_8_107811304	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227241196					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375909972	MGP_WTSI_8_107811304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106014036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	1486 bp proximal
Gm20163	predicted gene, 20163	1779 bp upstream
Matcap1	microtubule associated tyrosine carboxypeptidase 1	within coordinates
Rr401088	regulatory region 401088	1628 bp upstream
Rr668838	regulatory region 668838	278 bp distal
Rr668839	regulatory region 668839	923 bp proximal
Rr668840	regulatory region 668840	1636 bp proximal
Rr668841	regulatory region 668841	1790 bp proximal
Rr668842	regulatory region 668842	1861 bp proximal
Rr668843	regulatory region 668843	1987 bp proximal
Tssr82634	transcription start site region 82634	1664 bp downstream
Tssr82635	transcription start site region 82635	1680 bp downstream
Tssr82636	transcription start site region 82636	1716 bp downstream