rs227246757 SNP Detail

Summary

• ID
  rs227246757
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:92493340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATCTTCT CTGTACCCCG
  CTGTCAGTGC CTCTGGGTTT CCAGTTTCCC TTAATTTTCA CGTATCAGTC TGACTGGTGT
  CTGATGAACT TCTTGGTCCT CTTTTTGATG ATCTTGGGCT TCACCAGAGG CCGGCGAACA
  GCCATGATGC AGCAAAACAG ATGGCAGCCA CCTTGTAGGC AGTGCCAAAG AAGAGCTGCA
  S
  ATGCCATCTT AACACAGTCT ACTCTGAGTT CAAATCCTAC TACCCGAATA AAAAGCTGGA
  CACAGTGGCA CATTTGTAAT ACCAGCATTA GGGAGGCACA GACAGAAAGA TCTCTGGGGC
  TTGCTCTGTA GCCAATTTGT GGGCTCCAGG TTCAGTGAGA AAACTTGTCT CAAGAAGATA
  GATAAAGACA CCCAGTCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389492763	MGP_WTSI_13_93126787	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227246757					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389492763	MGP_WTSI_13_93126787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92493340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	1165 bp distal
Dhfr	dihydrofolate reductase	Intron
Gm19308	predicted gene, 19308	7 bp upstream
Msh3	mutS homolog 3	1825 bp upstream
Rr483664	regulatory region 483664	1339 bp distal
Rr483665	regulatory region 483665	998 bp proximal
Tssr120623	transcription start site region 120623	1656 bp downstream
Tssr120624	transcription start site region 120624	1622 bp downstream
Tssr120625	transcription start site region 120625	1615 bp downstream
Tssr120626	transcription start site region 120626	1584 bp downstream
Tssr123430	transcription start site region 123430	1807 bp upstream