rs227249577 SNP Detail

Summary

• ID
  rs227249577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40965224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGACG GCGCGGCCCC
  TGGGCACCCC GTCCGGGCCG TGCTCGATCG CCCGGGAAGC ACTGGGCTAA GCGAGGAGCA
  GCAGGCCAGA ACCTTGTAGG GCCTCGGGCC CGGGGACCCG AGGAGGATGA GCTGGCTCTT
  TCCCCTGGCG AAGAGCGCGT CATCCTCCGC GGCTGGGTCC CCTGCCGGCC TCACCAGTCT
  Y
  CAGCAGCAGA AGCAGCGGCT GATCGAGTCA CTCCGGAACT CCCATTCCAG GTGACGACTG
  GTGGCTTCGG CCCAGGGTAA AGTAGGACGG GAGGGCGGGC TGCTTGCAAA CACACCGTGT
  GCGAATCCGT AGGCCGCTCC ATCAGCTGCC TCCTGTTGAT GGGTCTTCCA GTGGGGTTAA
  GCGCTTGCTT CCCTAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss374393553	MGP_WTSI_8_41597537	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs227249577					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374393553	MGP_WTSI_8_41597537	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40965224 () rs orientation: forward

Symbol	Name	Function Class
Cnot7	CCR4-NOT transcription complex, subunit 7	within coordinates
Cpgi20281	CpG island 20281	within coordinates
Rr662586	regulatory region 662586	890 bp distal
Rr662587	regulatory region 662587	305 bp distal
Tssr2553	transcription start site region 2553	954 bp upstream
Tssr2554	transcription start site region 2554	695 bp downstream
Tssr76955	transcription start site region 76955	739 bp downstream
Tssr76956	transcription start site region 76956	396 bp downstream
Tssr76957	transcription start site region 76957	321 bp downstream
Tssr81046	transcription start site region 81046	1703 bp upstream
Tssr81047	transcription start site region 81047	909 bp upstream
Tssr81048	transcription start site region 81048	886 bp upstream
Tssr81049	transcription start site region 81049	837 bp upstream
Tssr81050	transcription start site region 81050	427 bp upstream
Vps37a	vacuolar protein sorting 37A	within coordinates