rs227250566 SNP Detail

Summary

• ID
  rs227250566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACACCAC AAGATTTGAA
  ATAGCCACGA GAGGATGGAT AGAGAGATGT CCAACTCCAG GAAGCGTGAA ACCCGGGAAC
  TTCAGAGTTC CAGGTCCCCC GAGTTGGCTG GCGGAGGGTG AAGTTCATTT TTTCCGTTTC
  TCACCACCCC TTTCCCAGCC TCCGGTCTCT AGTCTGAGTA AGAAGGGACC GGCGAGCGGA
  Y
  CCCGCTGACC TCCCCACACC CACACAGCCT AGGTCAGCGT GGTGATGCTC GGTGCTCAGC
  GTACCTGTCG CGCAGGTGGC CATAGCGCAG CCCCATGGCA GTGCACTCTG CCTCGCTCAC
  CGACAACCCC TTGCAGGACT TGATTGGGTA GATCCAGAGC TGTGCCACCG TTCCCACTTG
  CTGTAGCCGC CGGCGTCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352675736	MGP_WTSI_1_186634660	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	T	C	T	C	C	T	C	T	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227250566					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	T	C	T	C	C	T	C	T	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352675736	MGP_WTSI_1_186634660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	within coordinates
Gm70890	predicted gene, 70890	1143 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425290	regulatory region 425290	406 bp proximal
Rr425291	regulatory region 425291	1154 bp proximal
Rr425292	regulatory region 425292	1567 bp proximal
Rr425293	regulatory region 425293	1715 bp proximal
Tssr15650	transcription start site region 15650	199 bp downstream
Tssr15651	transcription start site region 15651	375 bp downstream
Tssr15652	transcription start site region 15652	389 bp downstream
Tssr15653	transcription start site region 15653	478 bp downstream
Tssr15654	transcription start site region 15654	505 bp downstream
Tssr15655	transcription start site region 15655	523 bp downstream