rs227251709 SNP Detail

Summary

• ID
  rs227251709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4643483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGCCGC CCCCGGGGTT
  CCACGGGCCG GGCAGAGGGG GCTGCGCGCC GCGCACCGCC GGGTTCAGTC CTCGGAAGCG
  CGTGCGGCCC CCGCCCTAGG CCCCGGCCGA GGACGGCCGT GCCGGGCGGA AACCTCCGGC
  CCCGGGGTTC CTGCCTCCGC CGCGGGGCGG GCGGGCCGCT CCTCTCAGAG GCCGGGAAGC
  Y
  CGGGCCCCTT GCCGCGGCCT CGCTTGGCAG GTGACGGCCT CCGCCTATCG CTGGTGGCGA
  CCGGGTTCCG GGCTTTCCTT AGGGGCATCT GGGCTGGGTG CGCGTTGCCT TGGGGACCTA
  TTTTATTTTG GCTTAGTTGA CTTTTCTTTT CTTTCTTTCT TCCTTTCTTT TCTTTTTCCT
  CCTTGGTCAG GGTTGCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323874150	CHEV_12_4600289	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227251709					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4643483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	within coordinates
Gm3625	predicted gene 3625	within coordinates
Gm48678	predicted gene, 48678	1857 bp downstream
Itsn2	intersectin 2	within coordinates
Rr256467	regulatory region 256467	1283 bp distal
Rr265387	regulatory region 265387	within coordinates
Tssr3767	transcription start site region 3767	315 bp upstream
Tssr112557	transcription start site region 112557	835 bp downstream
Tssr112558	transcription start site region 112558	810 bp downstream
Tssr112559	transcription start site region 112559	647 bp downstream
Tssr112560	transcription start site region 112560	538 bp downstream
Tssr112561	transcription start site region 112561	396 bp downstream
Tssr112562	transcription start site region 112562	336 bp downstream
Tssr112563	transcription start site region 112563	377 bp upstream
Tssr115637	transcription start site region 115637	959 bp upstream
Tssr115638	transcription start site region 115638	203 bp downstream
Tssr115639	transcription start site region 115639	219 bp downstream
Tssr115640	transcription start site region 115640	254 bp downstream
Tssr115641	transcription start site region 115641	293 bp downstream
Tssr115642	transcription start site region 115642	309 bp downstream
Tssr115643	transcription start site region 115643	1670 bp downstream