rs227252003 SNP Detail

Summary

• ID
  rs227252003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114292219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAGGCA GGAAGGCCAG
  TGTTAATTCA AAGCCAGCCT GGCTACATTG TCAGACTCTG TCCCAAAGAG AAGTGGGCGG
  GGGTGGGGAT GAAGTGGGGG AACAAAACAA AAAAGTAAAG AGCACATGTG GTAGCCCATG
  CTTTTAACCC CAGAGGCAGA GACAGTCACA TTCTGTGAGG TCAAAACTAT CCTGGTCTAC
  R
  TGTCAAGTTT CAGGCTACCC AGGGTCACAT AATGACACTT TATAAAGAAA AAAAGCCTTT
  TCTTTGTTTG GCAGAACACC CCTGGCTCCC TGAAGCCCTT TCCAGGAAAG CCCAAAGTGT
  GGGGTCTGTT CCTGCTCCTT TGAGTTCAGT CCCTTAGACA GTATAGATTT AGAGGCAAGC
  CACCAATATG ACTTCCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321652046	CHEV_5_114604167	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227252003					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114292219 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	782 bp proximal
Tssr48071	transcription start site region 48071	1268 bp upstream
Tssr48072	transcription start site region 48072	1295 bp upstream
Tssr48073	transcription start site region 48073	1313 bp upstream