rs227259235 SNP Detail

Summary

• ID
  rs227259235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127688028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCATTG CAGAGGGCTG
  TGGCCTTCAG TTCCCTCTCA ATGTCTAGGA GGCTGAGGCT CTGGAAAAGC AACTGAATAC
  ACTAAGCAGA AAGACGGCAG GAAAACGGCC ACTGCCTCCT TTCAACCTAA CTAGTTTTGC
  TTCCATTTTG GTTTCTGTCA TTGATTTTCT ATGGAAAAAT TCTGTGTAAA TTTTAAATAG
  Y
  TTAGAAAGGA ATTTTCCAGA ATTATTCAAT TTATAATTTG GAGTTCTGGT ATCCTTAAAA
  CCAATCCAAA AAGAAGAACA GGAGAATATC TCCATGATGA AAAATTAAAA TGACTTTTTG
  GAATGTTTTA TGTTGTTAAC TCTAATTCTC CTTCAGATAG TATGTGTACA AAAACAGCTC
  TATCTATGTG ACATTGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957981	CHEV_3_127597297	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227259235					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127688028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1335 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	1894 bp upstream
Rr584895	regulatory region 584895	72 bp distal
Rr584896	regulatory region 584896	1619 bp proximal
Rr584897	regulatory region 584897	1899 bp proximal
Tssr35606	transcription start site region 35606	225 bp downstream
Tssr35607	transcription start site region 35607	1129 bp downstream
Tssr35608	transcription start site region 35608	1841 bp downstream
Tssr35609	transcription start site region 35609	1868 bp downstream
Tssr35610	transcription start site region 35610	1892 bp downstream