rs227266456 SNP Detail

Summary

• ID
  rs227266456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69837849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCACTCCTT GGTGTCCGTT CCTCGCCTGT
  GAACCCCGGA GGACAGCAAT TGCTCGGTGC TGCAGCTTCG AAAAATGAAT GAGAGAGAGT
  GAGGCAATAG AGGGAGGCAG GATGGCCTTC CCTCCCATGT AGTGGGGTCT TGGCGGTGCA
  R
  AGCCTGCTTT GATTGCCTTG ACTCTTTCCC CAATCACCTT CTTATTGAAC CTGTTTCAGT
  ACAGTGACAG TGGCAGTTGA TGGATGCAGG AAATCTTGAA ATAAGGATCG CACAGACAGC
  CTCTACATTT TGTCAGCCCT TCCATCCCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085700	CHEV_12_70892062	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227266456					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69837849 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	within coordinates
Rr257091	regulatory region 257091	752 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	802 bp upstream
Tssr116528	transcription start site region 116528	799 bp upstream
Tssr116529	transcription start site region 116529	777 bp upstream
Tssr116530	transcription start site region 116530	444 bp upstream
Tssr116531	transcription start site region 116531	340 bp upstream
Tssr116532	transcription start site region 116532	154 bp downstream
Tssr116533	transcription start site region 116533	219 bp downstream
Tssr116534	transcription start site region 116534	236 bp downstream
Tssr116535	transcription start site region 116535	250 bp downstream
Tssr116536	transcription start site region 116536	278 bp downstream