rs227267091 SNP Detail

Summary

• ID
  rs227267091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41641234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCCCCT CTCAGACCCT
  TAAGTAGCAG GGCTCACACA TGCAAGGAGC TACATTTCTG GCCCTTTAGT GATTCTTAAG
  TGTACTTGTG TGTGGCTTCT ATCACATATT GTCCATGGAC AGTCAGAGAC CCATGGCCCC
  ACATCCAGCC TTAACTTCCC TCAGAATACT ATACTCACAG CAAAATGCAT ACTGGAGTCA
  Y
  AGTGGTGTTG GTTCCTGGTT CCACTTTCTA ACTCTCTTAA ACGAAGCTTT CTTCTCAATA
  AAACTGTCAT AGTAATAGCT ACTTCTTAGG TTCTCACTAA TTCATTTATA CCATACCAAC
  CACATCTCAG CAAATGTCAG CTGACAAGCC AAGACCAGGT GGCTAAGGGG CAGGGCTCCT
  CCTTCCAAGA AAAGGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361304372	MGP_WTSI_4_41588267	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227267091					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361304372	MGP_WTSI_4_41588267	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41641234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14161	CpG island 14161	450 bp distal
Enho	energy homeostasis associated	932 bp upstream
Gm12405	predicted gene 12405	1741 bp upstream
Gm12406	predicted gene 12406	within coordinates
Tssr36884	transcription start site region 36884	1829 bp downstream
Tssr41357	transcription start site region 41357	1251 bp upstream
Tssr41358	transcription start site region 41358	1097 bp upstream
Tssr41359	transcription start site region 41359	1001 bp upstream
Tssr41360	transcription start site region 41360	961 bp upstream
Tssr41361	transcription start site region 41361	922 bp upstream
Tssr41362	transcription start site region 41362	890 bp upstream
Tssr41363	transcription start site region 41363	870 bp upstream
Tssr41364	transcription start site region 41364	858 bp upstream
Tssr41365	transcription start site region 41365	832 bp upstream